PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009197001
Common NameLOC100242037, VIT_18s0001g07720
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GATA
Protein Properties Length: 249aa    MW: 27481.4 Da    PI: 7.467
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009197001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24e-17159195135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cgt++  Tp++Rrgp g+++LCnaCGl+++ +g+
  GSVIVT01009197001 159 CTHCGTSSksTPMMRRGPTGPRSLCNACGLFWANRGS 195
                        *********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.4E-112459IPR010399Tify domain
PROSITE profilePS5132014.5872459IPR010399Tify domain
PfamPF062001.4E-122658IPR010399Tify domain
PfamPF062033.6E-1691133IPR010402CCT domain
PROSITE profilePS5101712.691133IPR010402CCT domain
PROSITE profilePS5011410.686153213IPR000679Zinc finger, GATA-type
SMARTSM004013.9E-14153206IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.99E-12155204No hitNo description
Gene3DG3DSA:3.30.50.107.5E-16158200IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.34E-16159205No hitNo description
PROSITE patternPS003440159186IPR000679Zinc finger, GATA-type
PfamPF003205.6E-15159195IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEVAGDVPSD AVYVADGSEV ALQPSDATNQ LTLSFRGQVY VFDSVTHEKV RSVLLLLGTP  60
ELSSIAHNME IVPQNQRALT DFPGPYNQPH RAASLNRFRQ KRKERCFDKK IRYNVRQEVA  120
LRMQRNKGQF SSSKKSEGTF SWDSVQDSGQ DESPPETLCT HCGTSSKSTP MMRRGPTGPR  180
SLCNACGLFW ANRGSLRDLS KKNQDHSLNQ IERGDGEAND SDCGTSGYIN NNHVAFSNSD  240
NPALIPEQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.12400.0cell culture| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4718335e-75AM471833.2 Vitis vinifera contig VV78X137776.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283753.10.0PREDICTED: GATA transcription factor 25
SwissprotQ9LRH69e-78GAT25_ARATH; GATA transcription factor 25
TrEMBLF6H1460.0F6H146_VITVI; Uncharacterized protein
STRINGVIT_18s0001g07720.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.24e-80GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]