PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009234001
Common NameLOC100250635, VIT_18s0001g08040
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 296aa    MW: 33815.4 Da    PI: 4.7389
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009234001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11129172654
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  GSVIVT01009234001 129 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 172
                        589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.453123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-16126191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9129172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-12129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.94E-5130176No hitNo description
Gene3DG3DSA:4.10.280.102.6E-15130186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.89E-4221262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEVNEHGFLE ELLALRGDPW ETIPTGMNEF FSHGWGFDYR FDENPVTDSS YTKQDTPPFP  60
TQEDYPFPMM EEEEPAVHPG VDLHNMGLQA TCKVEPIQST EFPVFNVGVC NEVKNKRTKK  120
VEGQPSKNLM AERRRRKRLN DRLSMLRSVV PKISKMDRTS ILGDTIDYMK ELLERINNLQ  180
EENEVDSSQL NLLGIFKDLK PNEIMVRNSP KFDVERRNMD TRIEICCAGK PGLLLSTVNT  240
LEALGLEIQQ CVISCFNDFS MQASCSEELE KRTMVSSEEL KQTLFRNAGY GGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131138ERRRRKRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9117780.0JQ911778.1 Vitis amurensis clone Heilongjiang transcription factor bHLH mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285595.10.0PREDICTED: transcription factor bHLH93
SwissprotQ9LSL11e-87BH093_ARATH; Transcription factor bHLH93
TrEMBLF6GZL00.0F6GZL0_VITVI; Uncharacterized protein
STRINGVIT_18s0001g08040.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26361130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.16e-90beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]