PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009292001
Common NameVIT_18s0001g08600
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 431aa    MW: 46341.6 Da    PI: 6.3546
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009292001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-10274322355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  GSVIVT01009292001 274 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 322
                        58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.52E-11269326No hitNo description
SuperFamilySSF474596.8E-17269338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16272339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-7274322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGIDDNGNMG FPNTSQSILN CPSSGMNTHP ISEKVTGMTM SSASMYKSSN GGDPFFGSGW  60
DPIVSLSQNE NFGGSSMVSH SEFANSAYPV VLENQGIGST PHLVLYPSNS SLVEMVPKLP  120
CFGSGSFSEM VASFGLPECG QTANSGCPPN FPPNKEGLTE KSLNGAQSQE GHQISEGDAV  180
DASPSGKRRK SSFDPRPPLN TSKSADGEQP KGLPWENSEF SKEQEEKKLK IDQNMSPNLR  240
GKQPNKHAKD NSSNGEAPKE NYIHVRARRG QATNSHSLAE RVRREKISER MRLLQELVPG  300
CNKITGKAVM LDEIINYVQS LQQQVEFLSM KLATVNPELN IDIERLLSKD ILNSRGGSTS  360
VLGFGPGMSS SHPYPHGISQ GTLPGIPTPQ FHSTQAVWDG ELQSLLQMGF DSNPSSNNLG  420
TNAGRSKLEL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.167440.0fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4301990.0AM430199.2 Vitis vinifera contig VV78X228761.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019072099.10.0PREDICTED: transcription factor bHLH74 isoform X1
TrEMBLE0CNY10.0E0CNY1_VITVI; Uncharacterized protein
STRINGVIT_18s0001g08600.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-77bHLH family protein