PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009360001
Common NameLOC100255841, VIT_18s0001g09250
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LBD
Protein Properties Length: 223aa    MW: 24105.4 Da    PI: 8.2594
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009360001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.84.6e-302104198
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C+++C+l+ ++     p++q  ++ +v k+FG+s ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++++
  GSVIVT01009360001   2 SCNGCRVLRKGCSDSCILRTCLqwienPEAQGYATLFVSKFFGRSDLMSFISAVPENKRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHV 93 
                        6******************************************************************************************* PP

             DUF260  88 eqlkaelallk 98 
                        +q++++++l++
  GSVIVT01009360001  94 CQAAVDTVLAG 104
                        ****9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.5231107IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDSCILR TCLQWIENPE AQGYATLFVS KFFGRSDLMS FISAVPENKR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVDT VLAGGTLRPI PGILAGPIKP  120
GFDEASATFC TDAWKLRDAY SLSKPFMRDN ASEEAKRIET QPPHLGISAT ARFSNKINAG  180
RGKRSGTSFC SEGSSGTMSY DGSDDDRNMS GCQERKLLNL FI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.128310.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4520590.0AM452059.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X020259.15, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285250.11e-165PREDICTED: LOB domain-containing protein 38
SwissprotQ9SN231e-68LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A438DYF01e-164A0A438DYF0_VITVI; LOB domain-containing protein 38
TrEMBLE0CP371e-164E0CP37_VITVI; Uncharacterized protein
STRINGVIT_18s0001g09250.t011e-165(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.14e-71LOB domain-containing protein 38