PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009424001
Common NameLOC100243698, VIT_18s0001g09850
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 262aa    MW: 28799.8 Da    PI: 9.3613
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009424001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.96.5e-202368147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw + 
  GSVIVT01009424001 23 KGPWSPEEDEALQRLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 68
                       79******************************.***********985 PP
2Myb_DNA-binding52.79.8e-1777119347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        ++T+eEd  +++a++++G++ W+tIar +  gRt++ +k++w++ 
  GSVIVT01009424001  77 AFTPEEDATIIRAHARFGNK-WATIARLLV-GRTDNAIKNHWNST 119
                        79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.6421873IPR017930Myb domain
SuperFamilySSF466894.12E-3220116IPR009057Homeodomain-like
SMARTSM007178.1E-182271IPR001005SANT/Myb domain
PfamPF002491.4E-192368IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-272476IPR009057Homeodomain-like
CDDcd001673.02E-172567No hitNo description
SMARTSM007175.1E-1474122IPR001005SANT/Myb domain
PROSITE profilePS5129420.88675124IPR017930Myb domain
PfamPF002492.3E-1477119IPR001005SANT/Myb domain
CDDcd001671.43E-1177120No hitNo description
Gene3DG3DSA:1.10.10.604.5E-2377123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MLSPHTKASQ SMASSKKDLD RIKGPWSPEE DEALQRLVQK HGPRNWSLIS KSIPGRSGKS  60
CRLRWCNQLS PQVEHRAFTP EEDATIIRAH ARFGNKWATI ARLLVGRTDN AIKNHWNSTL  120
KRKCSPSSPS GSEFSDSSAP GMASSLVYRP VPRTGPIVLP TQKIEAASST NDPPTSLSLS  180
LPGSDSCEVS NHLSGSDHNC ELGLGMSEKP FFTPEFLAVM QEMIRKEVRN YMSGMEQNGL  240
CLQTEAIWNA VMKRIGIGKI E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-41221243105MYB PROTO-ONCOGENE PROTEIN
1h88_C8e-412212457159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-412212457159MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-41221243105C-Myb DNA-Binding Domain
1msf_C1e-41221243105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.22880.0bud| cell culture| flower| fruit| inflorescence| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3951610.0FQ395161.1 Vitis vinifera clone SS0AFA17YH05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285015.11e-174PREDICTED: transcription factor MYB44
SwissprotO231604e-84MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A438DYA71e-172A0A438DYA7_VITVI; Transcription factor MYB44
TrEMBLF6GZY01e-172F6GZY0_VITVI; Uncharacterized protein
STRINGVIT_18s0001g09850.t011e-173(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-70myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]