PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009453001
Common NameLOC100250666, VIT_18s0001g10160, VITISV_017034
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WOX
Protein Properties Length: 212aa    MW: 24273.4 Da    PI: 9.8003
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009453001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.21e-2177136357
                        --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        +R+++t+eq+ +Le l+++  r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  GSVIVT01009453001  77 TRWNPTQEQIGILEMLYKSgMRTPNAQQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 136
                        7*****************99**************************************97 PP
2Wus_type_Homeobox119.91.1e-3877138465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        tRW+Pt+eQi iLe+lyksG+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq
  GSVIVT01009453001  77 TRWNPTQEQIGILEMLYKSGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 138
                        8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.44672137IPR001356Homeobox domain
SuperFamilySSF466892.95E-1372142IPR009057Homeodomain-like
SMARTSM003891.7E-874141IPR001356Homeobox domain
PfamPF000462.0E-1977136IPR001356Homeobox domain
CDDcd000864.43E-677138No hitNo description
Gene3DG3DSA:1.10.10.601.2E-878136IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGSMKVHQFA RGFWEHEPSL TLGCKRLRPL APKLANSDSV AAFDLKSFIR PESGPRKLGC  60
SDDKRDSPQV ETHPGGTRWN PTQEQIGILE MLYKSGMRTP NAQQIEQITA QLGKYGKIEG  120
KNVFYWFQNH KARERQKQKR NSLGLGHCPR TPTSITTITL DTRVEVGREE DSPNKRKCKS  180
WTFETVEENN RYYREEGDKT LELFPLHPEG R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.149570.0bud| cell culture| fruit| inflorescence| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4474941e-158AM447494.2 Vitis vinifera contig VV78X024983.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284927.11e-158PREDICTED: WUSCHEL-related homeobox 4
SwissprotQ6X7J95e-76WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A438DYW81e-157A0A438DYW8_VITVI; WUSCHEL-related homeobox 4
TrEMBLA5B5M91e-157A5B5M9_VITVI; Uncharacterized protein
STRINGVIT_18s0001g10160.t011e-158(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP71671117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.17e-76WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Velasco R, et al.
    A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.
    PLoS ONE, 2007. 2(12): p. e1326
    [PMID:18094749]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  4. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  5. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  6. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]