PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009519001
Common NameVIT_18s0001g10710
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 218aa    MW: 24755.6 Da    PI: 10.2456
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009519001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.4e-14113200194
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k +++s+v+   +l lp +f+++  ++ ++++ + l  e+g ++   +  rk++    l++GWk+F  a++L +gD +vF+l++ ++f+ 
  GSVIVT01009519001 113 FLKSMLQSHVTGGFWLGLPVHFCKTT-LP-KSDVIMNLVGEEGDEYPTVFLARKSG----LSGGWKRFSVAHKLVDGDALVFQLVRPTKFKV 198
                        89*********************666.44.37799***************666666....9***********************99888866 PP

                        EE CS
                 B3  93 vv 94 
                         +
  GSVIVT01009519001 199 II 200
                        55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-17105200IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-21106200IPR015300DNA-binding pseudobarrel domain
CDDcd100176.03E-23111200No hitNo description
PfamPF023621.4E-12113201IPR003340B3 DNA binding domain
SMARTSM010194.6E-18113207IPR003340B3 DNA binding domain
PROSITE profilePS5086310.391113204IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVAAKLTYEE CRRKRLEENN KRLQALNLPL LSQALRESLT PKSSPAKNSK PRRVREQQVP  60
LRRSSRVANK AYQAQKEGRD LSNRVYASEE ARTCAMERAE ELQASLEPQY PSFLKSMLQS  120
HVTGGFWLGL PVHFCKTTLP KSDVIMNLVG EEGDEYPTVF LARKSGLSGG WKRFSVAHKL  180
VDGDALVFQL VRPTKFKVII ELHCRLSTFI IPTMEYF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4384031e-146AM438403.1 Vitis vinifera contig VV78X148954.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664581.11e-139PREDICTED: B3 domain-containing protein At5g42700
SwissprotQ9FMZ45e-65Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLE0CP771e-160E0CP77_VITVI; Uncharacterized protein
STRINGVIT_18s0001g10710.t011e-160(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-67B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]