PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009586001
Common NameLOC100253936, VIT_18s0001g11360
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 605aa    MW: 66972.7 Da    PI: 9.4071
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009586001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.8e-17101002100
                        EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        f v+      +s rl +p +f+++++g + +   ++l  +s ++W v l   ++ +  +l +GW  Fv+++ ++ gD++vF++dg+  f  +
  GSVIVT01009586001  10 FEVF--QPDASSERLKIPSRFIKHMEGRTSG--FVSLVGPSDNTWHVDL--IQQNSDLLLHDGWPVFVRDHCIECGDSLVFRYDGNLHF--T 93 
                        5555..44555668********888877544..7***************..5666679*************************997777..9 PP

                        EEEE-SS CS
                 B3  94 vkvfrks 100
                        v+vf++s
  GSVIVT01009586001  94 VQVFDRS 100
                        ***9985 PP
2B346.95.1e-152743571197
                        HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        + s  l +p kf  eh   ++++++++l++++g  W+v+   + k  + +++ +GW  Fv+ ngLk gD+++F+l+++ e  ++v+++
  GSVIVT01009586001 274 SGSYTLKIPYKFSMEHL--PKCKIKIVLRNLKGDCWTVNSVPTTKVHTlHTFCGGWMAFVRGNGLKMGDICIFELVRKCE--MRVHIL 357
                        4556799*****99995..45999****************4433333357777*********************998443..577765 PP
3B348.91.2e-155065861396
                        TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        s  l +p +f  +h   ++++++++l++++g+ W+v+   + k+++ +++ +GW  Fv+ n++k gD+++F+l+g+se  ++v++
  GSVIVT01009586001 506 SYTLKIPYQFSMAHL--PKCKTEIVLRNLKGECWTVNSVPDTKGRMvHTFCGGWMAFVRGNDVKMGDICMFELVGKSE--MLVHI 586
                        45699*****98885..34889****************77666666799************************98544..47776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-243102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-233102IPR015300DNA-binding pseudobarrel domain
CDDcd100178.76E-19798No hitNo description
PROSITE profilePS5086313.2817100IPR003340B3 DNA binding domain
SMARTSM010191.9E-139100IPR003340B3 DNA binding domain
PfamPF023624.1E-141099IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-21256359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-23257359IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-18262357No hitNo description
SMARTSM010191.1E-11264360IPR003340B3 DNA binding domain
PROSITE profilePS5086312.915264360IPR003340B3 DNA binding domain
PfamPF023628.4E-12266357IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-21486587IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-23487588IPR015300DNA-binding pseudobarrel domain
CDDcd100174.39E-19492586No hitNo description
PROSITE profilePS5086312.901494590IPR003340B3 DNA binding domain
SMARTSM010191.9E-12497590IPR003340B3 DNA binding domain
PfamPF023621.2E-12504586IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MKNSKRPHFF EVFQPDASSE RLKIPSRFIK HMEGRTSGFV SLVGPSDNTW HVDLIQQNSD  60
LLLHDGWPVF VRDHCIECGD SLVFRYDGNL HFTVQVFDRS SCEKEAAFHA KCSQDPGGLD  120
DPLRKKRERE SPVVSKDKIF EGVPKKMRGS SCHVHSECIT KNLEDKMDKS DKEACKCEDL  180
FMTEKCQAAV FSNETKKCGS PSKDSLSSMP SQLKACNEKP EAAIQSRADD EFDSRARGCG  240
CTSLLSTFEE KKVAQSFTSS FPNFVRIMKK FNISGSYTLK IPYKFSMEHL PKCKIKIVLR  300
NLKGDCWTVN SVPTTKVHTL HTFCGGWMAF VRGNGLKMGD ICIFELVRKC EMRVHILGAG  360
KEGIDGQSGK TMSNGFTPGC AATSHKNPEG LPKKPKGNSS KVHLKHITKL GVSGKKGSKT  420
HQDTVPNEMK KHGSSSKSSV SSASKACNEK PESAIQNTTS AADDLRSQAK SFVSTISAEE  480
EKAVRSFTSS YPYFARFMKK FNISGSYTLK IPYQFSMAHL PKCKTEIVLR NLKGECWTVN  540
SVPDTKGRMV HTFCGGWMAF VRGNDVKMGD ICMFELVGKS EMLVHISGVG KKGSDHQSGK  600
AASN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.162210.0bud| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4879840.0AM487984.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X179024.3, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282159.30.0PREDICTED: B3 domain-containing protein Os01g0723500 isoform X1
RefseqXP_010664617.10.0PREDICTED: B3 domain-containing protein Os01g0723500 isoform X1
RefseqXP_010664618.10.0PREDICTED: B3 domain-containing protein Os01g0723500 isoform X1
TrEMBLE0CPD40.0E0CPD4_VITVI; Uncharacterized protein
STRINGVIT_18s0001g11360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7653917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-14B3 family protein