PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009589001
Common NameVIT_18s0001g11390
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 288aa    MW: 31803.1 Da    PI: 8.1731
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009589001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.9e-3287140255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GSVIVT01009589001  87 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 140
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-1584141IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-2885141IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-2387140IPR006447Myb domain, plants
PfamPF002491.7E-788139IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MFFSSNPIMG TTSPLPDLSL QISPPSISDC EPMLSLGLEM AALNPPPLEL PRNLHHNHHN  60
HQPQIYGREF KRNSRMMNGS KRSIRAPRMR WTTTLHAHFV HAVQLLGGHE RATPKSVLEL  120
MNVKDLTLAH VKSHLQMYRT VKSTDKGTGQ GQTDMGLNQR TGIGQVELGG LSCDKADATP  180
SFSSNTPQPS TPQKISRSSW SLSMETNDEG RLSHENGLKY SHLMANDTKM EGHKVALHVA  240
EGPKERVDSS ALSPSDMLLN LEFTLGRPSW QIDYADQSPN ELALLKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-1788142458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-1788142458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-1788142458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-1788142458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-1788142458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-1788142458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-1788142458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-1788142458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4879841e-133AM487984.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X179024.3, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664623.10.0PREDICTED: probable transcription factor KAN4 isoform X2
TrEMBLA0A438K1W00.0A0A438K1W0_VITVI; Putative transcription factor KAN4
STRINGVIT_18s0001g11390.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.14e-68G2-like family protein