PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009651001
Common NameLOC100252228, VIT_18s0001g11980
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 356aa    MW: 38637 Da    PI: 5.4619
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009651001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM385.2e-12388975128
                NAM  75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++  ++g+Wk +g+  e++s +++ +g ++t+ fy+g++p+  ktdWv+++y++
  GSVIVT01009651001  38 TK-FAEGFWKPKGEPYEIFS-NSSITGWRTTFEFYEGTTPHVLKTDWVLQQYKI 89 
                        22.458**************.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.5241112IPR003441NAC domain
SuperFamilySSF1019411.83E-202111IPR003441NAC domain
PfamPF023659.2E-52289IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MINGSPLPDN VMIEVNPYQH NPSCLSDRFW YLTSSEDTKF AEGFWKPKGE PYEIFSNSSI  60
TGWRTTFEFY EGTTPHVLKT DWVLQQYKIT QKGQSKNIKP MASSSLCRVF QSRGQSSSHE  120
MQKELGVANV ADENHTCSKP SVVSNTDNST GQGSKSESQV QHGNGETGLL AAPERSLNHP  180
VDNLPEIDYF SDGDFLELGD LADPVSPSSS SDNSSCLSQT SDECFDSLAL LRDLECDKDV  240
GCKFSVAALV MPDKVVLQPA SSGSLTCDDR RKLPAEGPPK TDSSLLGSTK LSEKKGLKRA  300
IATQEADNKV EGPSSNPHNL VASSGSNKAA SSDEKGKAAA DRKKKLKKYL CFMPF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.69730.0bud| cell culture| flower| fruit| leaf| pedicel
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4735401e-174AM473540.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X110378.12, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664657.10.0PREDICTED: NAC domain-containing protein 30 isoform X2
TrEMBLE0CQ010.0E0CQ01_VITVI; Uncharacterized protein
STRINGVIT_18s0001g11980.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1216455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.12e-14NAC domain containing protein 57