PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009723001
Common NameLOC100248845, VIT_18s0001g12610
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 103aa    MW: 11453.8 Da    PI: 8.4733
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009723001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.7e-101558344
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       +WT+   +l+ +a +++ ++   +W+ Ia+ +g g++++++k ++
  GSVIVT01009723001 15 SWTQKQNKLFEEALALYDKNtpdRWANIAKAVG-GKSAEEVKRHY 58
                       7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.6711165IPR017884SANT domain
SMARTSM007171.0E-81264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-51459IPR009057Homeodomain-like
SuperFamilySSF466892.92E-131470IPR009057Homeodomain-like
PfamPF002494.2E-81558IPR001005SANT/Myb domain
CDDcd001672.00E-71658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MASHAFSSSC YSSSSWTQKQ NKLFEEALAL YDKNTPDRWA NIAKAVGGKS AEEVKRHYEI  60
LEQDVMHIEN GQVPLPIYRS TGSSSGGSVD EQRHLLKNLK LR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-336102193RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.96431e-175leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4890181e-155AM489018.2 Vitis vinifera contig VV78X242076.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282280.17e-72PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB83e-34RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLE0CQD91e-70E0CQD9_VITVI; Uncharacterized protein
STRINGVIT_18s0001g12610.t013e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-36RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]