PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009801001
Common NameVIT_18s0001g13320
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 202aa    MW: 22407.2 Da    PI: 5.0285
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009801001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.5e-201362255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t +eAa a++aa++kl+g
  GSVIVT01009801001 13 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSYEAAIAYDAAARKLYG 62
                       69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.90E-211272No hitNo description
PfamPF008478.7E-141362IPR001471AP2/ERF domain
SMARTSM003802.9E-341376IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-211370IPR016177DNA-binding domain
PROSITE profilePS5103221.9831370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-301371IPR001471AP2/ERF domain
PRINTSPR003671.5E-91425IPR001471AP2/ERF domain
PRINTSPR003671.5E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MRGKGGPENA MCTYKGVRQR TWGKWVAEIR EPNRGARLWL GTFDTSYEAA IAYDAAARKL  60
YGPEAKLNLP ELCAQPPANT QFTHNQIPPN PNITPPSLTP LPRPNIQTPP YHKYSVVPSP  120
ATQEVPPHAK PTAINEKNGE NDDGMEGVWA NMNVTLPKVD DSLWTETLMS MDFPAFDDTE  180
IFGSNLVDGN SWEMLQSPWR T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-171470360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4431530.0AM443153.2 Vitis vinifera contig VV78X232680.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280893.31e-150PREDICTED: dehydration-responsive element-binding protein 2D
TrEMBLE0CPG11e-148E0CPG1_VITVI; Uncharacterized protein
STRINGVIT_18s0001g13320.t011e-148(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-41ERF family protein