PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01009812001

Common Name

LOC100260953, VIT_18s0001g13420

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

SRS

Protein Properties

Length: 290aa MW: 31659.3 Da PI: 7.9199

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01009812001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	103.8	3e-32	105	161	3	59
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaa 59 g+++CqdCGnqakkdC h+RCRtCCksrgf C thvkstWvpaakrre q+++ GSVIVT01009812001 105 GGGMNCQDCGNQAKKDCIHMRCRTCCKSRGFPCPTHVKSTWVPAAKRRENQKRQREN 161 5789*********************************************98877654 PP
2	DUF702	85.5	1.3e-26	169	228	95	154
DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++ le+ ++P+ev+s+a frcvrvs++d+++e+laYqtav+igGhvfkGiLyd+G+e+ GSVIVT01009812001 169 TTTSGLEVGHFPSEVNSPAYFRCVRVSAMDEADEQLAYQTAVNIGGHVFKGILYDHGPES 228 5667789999************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.3E-28	107	159	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.5E-27	109	151	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	4.6E-25	155	227	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	6.4E-25	178	226	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MAGYFSLGGR ERVNLREEGE EEKVVHNPGN EIPSNSLFLY RNEEIYNKGF ELWQQYCHQR 60 LHQPQNIVFS SSATFGVSTP SGRTYNLSDE SCRSGFTVMR QGGGGGGMNC QDCGNQAKKD 120 CIHMRCRTCC KSRGFPCPTH VKSTWVPAAK RRENQKRQRE NPVAPALATT TSGLEVGHFP 180 SEVNSPAYFR CVRVSAMDEA DEQLAYQTAV NIGGHVFKGI LYDHGPESRY GGESSSGGGS 240 GSQQHNLITA PPGVTTTSNQ ATTLLDPSLY PAPLNVFMAG TQFFPPPRP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM469149	0.0	AM469149.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X027578.8, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002280777.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5
Swissprot	K4B6C9	1e-84	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A438K1Y9	0.0	A0A438K1Y9_VITVI; Protein SHI related sequence 5
TrEMBL	F6GZQ0	0.0	F6GZQ0_VITVI; Uncharacterized protein
STRING	VIT_18s0001g13420.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1872	11	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-71	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	GSVIVT01009812001
Entrez Gene	100260953

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]