PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01010100001

Common Name

LOC100246122, VIT_01s0010g00540

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

bHLH

Protein Properties

Length: 329aa MW: 36354.4 Da PI: 6.381

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01010100001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.2	4.7e-16	42	91	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq GSVIVT01010100001 42 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 91 889***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.42E-19	38	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-23	39	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.215	40	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-13	42	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.81E-14	42	95	No hit	No description
SMART	SM00353	4.6E-12	46	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MKQDKGHREE EEEEEEEELS MKKEGPLTKK DGKNHDKANA MRSKHSVTEQ RRRSKINERF 60 QILRDLIPHS DQKRDTASFL LEVIEYVQYL QEKVQKYEGS YQGLTPEPTK LMPWRNSHWR 120 VQSFVGHPQA INNGSGPGSA FSGKFDENNI NITSTMLVKA QNPVESDLSR DATCKAMDHQ 180 SEFNKAIVMP ISLQSNMSAP VQSEGGLVHP LQGPVSDAQS ADCPITSETL SKKEELMIEG 240 GTISISSAYS QGLLNTLTQA LQSSGVDLSQ ASISVQIDLG KRANRGLPSG TSIAKDHENP 300 PPSNHIIAHH RDASSAEDSD QSQKRLKT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.8268	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM466437	0.0	AM466437.2 Vitis vinifera contig VV78X152420.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002266685.2	0.0	PREDICTED: transcription factor BIM2 isoform X1
Refseq	XP_019076781.1	0.0	PREDICTED: transcription factor BIM2 isoform X1
Refseq	XP_019076783.1	0.0	PREDICTED: transcription factor BIM2 isoform X1
Refseq	XP_019076786.1	0.0	PREDICTED: transcription factor BIM2 isoform X1
Swissprot	Q9CAA4	1e-110	BIM2_ARATH; Transcription factor BIM2
TrEMBL	D7TA75	0.0	D7TA75_VITVI; Uncharacterized protein
STRING	VIT_01s0010g00540.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1360	17	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-106	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	GSVIVT01010100001
Entrez Gene	100246122

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]