PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010243001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 254aa    MW: 27653.5 Da    PI: 8.5003
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010243001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.3e-08108130427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        ++C ff++ G C  GdrC F Hgp
  GSVIVT01010243001 108 VPCIFFQK-GLCLKGDRCAFLHGP 130
                        79******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.4132453IPR000571Zinc finger, CCCH-type
SMARTSM003560.00182552IPR000571Zinc finger, CCCH-type
PfamPF156632.0E-122579No hitNo description
PROSITE profilePS5010311.7515581IPR000571Zinc finger, CCCH-type
SMARTSM003560.215780IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549104131IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5105130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6105129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5106130IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-5107130IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVAATKDSTA PSQPSAAPPE EDALKRNTDC VYFLASPLTC KKGSECEYRH SEHARMNPRD  60
CWFWLNGNCL NPKCSFRHPP LDGLLGTQAT TPSGSSIPTS HSSGKQSVPC IFFQKGLCLK  120
GDRCAFLHGP NPTGNKIPQA PAATPGTEPP SLKKVFGGLE KCTQEQRVLQ PNFSKSFEMI  180
TVFRMVVRML MSFIESPLLV LMSLLMMISE ILITIMMKIS LEKCSVIHMA MTPMSTCMGS  240
ILGIIAGLHQ RGC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4274561e-126AM427456.2 Vitis vinifera contig VV78X242760.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654714.11e-120PREDICTED: zinc finger CCCH domain-containing protein 17
SwissprotQ9ZUM03e-60C3H17_ARATH; Zinc finger CCCH domain-containing protein 17
TrEMBLF6HG131e-118F6HG13_VITVI; Uncharacterized protein
STRINGVIT_01s0010g01770.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24551220
Publications ? help Back to Top
  1. Seok HY, et al.
    AtC3H17, a Non-Tandem CCCH Zinc Finger Protein, Functions as a Nuclear Transcriptional Activator and Has Pleiotropic Effects on Vegetative Development, Flowering and Seed Development in Arabidopsis.
    Plant Cell Physiol., 2016. 57(3): p. 603-15
    [PMID:26858286]
  2. Seok HY, et al.
    Arabidopsis non-TZF gene AtC3H17 functions as a positive regulator in salt stress response.
    Biochem. Biophys. Res. Commun., 2018. 498(4): p. 954-959
    [PMID:29548822]