PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010260001
Common NameLOC100261324, VIT_01s0010g01910
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NF-YB
Protein Properties Length: 153aa    MW: 17264.5 Da    PI: 5.844
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010260001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB154.32.2e-48398297
              NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                        eqd +lPianv+rimk++ P  akisk+aket+qecvsefi fvt+eas+kcqre+rkt+ngdd++wal+ lGf+d++e++  yl+kyre+e+
  GSVIVT01010260001  3 DEQDLLLPIANVGRIMKQIPPPSAKISKEAKETMQECVSEFIKFVTGEASEKCQRENRKTVNGDDICWALSALGFDDHAEAIVRYLHKYREFER 96
                       599******************************************************************************************9 PP

              NF-YB 96 ek 97
                       e+
  GSVIVT01010260001 97 ER 98
                       96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.8E-473110IPR009072Histone-fold
SuperFamilySSF471135.28E-365102IPR009072Histone-fold
PfamPF008082.9E-27972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-153654No hitNo description
PRINTSPR006151.2E-155573No hitNo description
PRINTSPR006151.2E-157492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MADEQDLLLP IANVGRIMKQ IPPPSAKISK EAKETMQECV SEFIKFVTGE ASEKCQRENR  60
KTVNGDDICW ALSALGFDDH AEAIVRYLHK YREFERERPN QRVQNEVDST RTKSGASDYK  120
CIQAGKQTET PTPILLFEVT DQNGNRSLTK PF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-39493392Transcription factor HapC (Eurofung)
4g92_B1e-39493392Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4372170.0AM437217.2 Vitis vinifera contig VV78X191396.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269496.11e-112PREDICTED: nuclear transcription factor Y subunit B-4
SwissprotO822489e-51NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A438EJL11e-110A0A438EJL1_VITVI; Nuclear transcription factor Y subunit B-5
TrEMBLD7TAH31e-110D7TAH3_VITVI; Uncharacterized protein
STRINGVIT_01s0010g01910.t011e-111(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-53nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]