PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01010264001

Common Name

LOC100249348, VIT_01s0010g01940

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NF-YB

Protein Properties

Length: 153aa MW: 16893.3 Da PI: 8.9164

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01010264001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	143	7.3e-45	4	98	3	97
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +qd +lPianv+rimk++lP ak+sk+aketvqecvsef+ fvt+eas kc++e+r+t++ dd++wal+ lG++dy+ + yl+kyre+e+e GSVIVT01010264001 4 KQDLLLPIANVGRIMKQILPPGAKVSKEAKETVQECVSEFVKFVTGEASAKCRKEDRQTVTVDDICWALSALGLDDYAGATVRYLHKYREFERE 97 7999****************************************************************************************99 PP NF-YB 97 k 97 + GSVIVT01010264001 98 R 98 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.1E-42	3	108	IPR009072	Histone-fold
SuperFamily	SSF47113	2.48E-33	5	102	IPR009072	Histone-fold
Pfam	PF00808	4.1E-23	9	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.0E-9	36	54	No hit	No description
PRINTS	PR00615	1.0E-9	55	73	No hit	No description
PRINTS	PR00615	1.0E-9	74	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MADKQDLLLP IANVGRIMKQ ILPPGAKVSK EAKETVQECV SEFVKFVTGE ASAKCRKEDR 60 QTVTVDDICW ALSALGLDDY AGATVRYLHK YREFERERVN QKVQNEVHST RAKSGASNYK 120 CIQAGKQTET PTPLLLFKVT DQNGSSSLTK LS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-36	4	93	8	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM435987	0.0	AM435987.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X051309.14, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010656509.1	1e-111	PREDICTED: nuclear transcription factor Y subunit B-4
Swissprot	O82248	6e-46	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	D7TAH6	1e-109	D7TAH6_VITVI; Uncharacterized protein
STRING	VIT_01s0010g01940.t01	1e-110	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP168	17	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	3e-48	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	GSVIVT01010264001
Entrez Gene	100249348

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]