PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010595001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HSF
Protein Properties Length: 297aa    MW: 33300.7 Da    PI: 9.2622
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010595001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.99.1e-35211112101
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y+++ed++++++isw+e+g++fvv+++  +a+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+l
  GSVIVT01010595001  21 FLTKTYQLVEDRTVDDVISWNEDGSAFVVWNTAVLARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKRL 103
                        9*****************************************************************99.........*************** PP

                        XXXXXXXX CS
       HSF_DNA-bind  94 lekikrkk 101
                        l++i+r++
  GSVIVT01010595001 104 LCDIQRRR 111
                        ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.6E-3713105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-5517110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.48E-3418110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.0E-202144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-205971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSRPPVEQSG GESQKSLPTP FLTKTYQLVE DRTVDDVISW NEDGSAFVVW NTAVLARDLL  60
PKYFKHNNFS SFVRQLNTYG FRKVVPDRWE FSNDCFRRGE KRLLCDIQRR RISSTAPISP  120
VSSSNCADER LISSNSPPAT TTTPHATSNT AGLIDENERL RKENVELNRE LNRMKTLCNN  180
IFALISSNYT NNIFGNVSQT DKPLNRFPEK QFSSEMMIEE EMTPRLFGVA IGAKRAREGE  240
GGFGGRPGSG TGTPTALVGA KPELMPSSFS NHKKKCRVFF ACISPLHSFF LYFISF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-242111029129Heat shock factor protein 1
5d5v_B4e-242111029129Heat shock factor protein 1
5d5v_D4e-242111029129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.259500.0flower
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4675150.0AM467515.2 Vitis vinifera contig VV78X111319.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273914.30.0PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW46e-79HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLF6HP520.0F6HP52_VITVI; Uncharacterized protein
STRINGVIT_16s0100g00720.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.19e-71heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]