PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01010625001

Common Name

LOC100243436, VIT_16s0100g00440

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

LBD

Protein Properties

Length: 154aa MW: 17235.6 Da PI: 8.9766

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01010625001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.7	9.2e-39	4	104	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+C++dC+++ yfp+++p++fa vh+++Gasn+ k+l+++p++ r +a++s++yeA++r+ dPvyG v++i+ l+q+++++++ GSVIVT01010625001 4 RCAACKYLRRRCPPDCIFSSYFPSNDPQRFASVHRIYGASNIGKMLQQIPPHLRAEATESMYYEAQCRVADPVYGIVKTISLLNQEIHHAQS 95 6***************************************************************************************** PP DUF260 93 elallkeel 101 +la++++++ GSVIVT01010625001 96 QLAKVQAQI 104 ***9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.395	3	104	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-39	4	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MNSRCAACKY LRRRCPPDCI FSSYFPSNDP QRFASVHRIY GASNIGKMLQ QIPPHLRAEA 60 TESMYYEAQC RVADPVYGIV KTISLLNQEI HHAQSQLAKV QAQIAFYNAQ VHGNNKIQNV 120 ELPSSNFNNS LANQGDAFPH PTLPLSIRPS WSM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-37	5	107	12	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-37	5	107	12	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM482489	1e-164	AM482489.1 Vitis vinifera contig VV78X039920.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002274838.1	1e-112	PREDICTED: LOB domain-containing protein 24
Swissprot	P59468	6e-48	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	D7TMW8	1e-111	D7TMW8_VITVI; Uncharacterized protein
STRING	VIT_16s0100g00440.t01	1e-111	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-50	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	GSVIVT01010625001
Entrez Gene	100243436