PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010626001
Common NameVIT_16s0100g00430
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARR-B
Protein Properties Length: 521aa    MW: 57219.3 Da    PI: 8.8297
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010626001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.82.8e-24131184155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+++ Wt+ LH+rF+ea +++ G e+A+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  GSVIVT01010626001 131 KAKVIWTSALHNRFLEAARKI-GLERAVPKRILEIMNVPGLTRENVASHLQKYRI 184
                        67999****************.********************************6 PP
2Response_reg35.64.9e-1315653109
                        CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
       Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                        mp+mdG+e+ +  +ee  +lp+++++a ++e+ +l+ l+aGa  +++Kp++ ++l +
  GSVIVT01010626001   1 MPEMDGFEFQRLVHEEF-HLPVVMMSADDKESSMLRGLEAGAAFYIVKPVNYDDLKN 56 
                        9************9999.*********************************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001565.88E-13161No hitNo description
PROSITE profilePS5011023.422162IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.37E-15170IPR011006CheY-like superfamily
PfamPF000724.0E-9156IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.3E-17191No hitNo description
SuperFamilySSF466899.85E-18128188IPR009057Homeodomain-like
PROSITE profilePS5129411.198128187IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-25129188IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-24131184IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MPEMDGFEFQ RLVHEEFHLP VVMMSADDKE SSMLRGLEAG AAFYIVKPVN YDDLKNLWQY  60
AVGPKKGKSH IVMQEIERTQ GASQLEKTSN NEVESLMNEE KHNKRDSKRK TLKKANEGNG  120
KEKSETVAPK KAKVIWTSAL HNRFLEAARK IGLERAVPKR ILEIMNVPGL TRENVASHLQ  180
KYRIFLKRVM ETSSSGTITG KNISERTLRS SFATGHPSLM VNALQRGFPQ FLDHQQVGAS  240
QLQPRFLGNL PIANASSLSS TIFPNQQASS GNPIPQLGYG QAHSMNKHAY LQQPTFGNTK  300
ALYQANGAGM NATNPMQMYQ QKTQARSELV PNAMSNNTFT AFGVSDPNNI HGIQNNGVNN  360
SDMTLNIAGS GQIGFAGGGI LNGFNGGYGL FDGNNGITHA SLRNVNSGYY AEGACSSAGF  420
GGTNQIPPRF SNVIQQENNP MLLPQQNNLG EGGEDNSYLL DQLRNNTAPM ENTSISQFAE  480
NDLDEIFGQN QPKNPSYNEV LLKLINYFLG CTGYIFFIPI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-21128189263ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4322450.0AM432245.1 Vitis vinifera contig VV78X151044.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019081519.10.0PREDICTED: two-component response regulator ARR1
TrEMBLF6HP670.0F6HP67_VITVI; Uncharacterized protein
STRINGVIT_16s0100g00430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1212546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-45response regulator 2