PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010627001
Common NameVIT_16s0100g00420
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARR-B
Protein Properties Length: 593aa    MW: 64595.3 Da    PI: 5.921
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010627001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.25.1e-25212264255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        ++++Wt+ LH+rF+eav+++ G e+A+Pk+ilelm+++gLt+e+v+SHLQkYR+
  GSVIVT01010627001 212 TKVVWTSALHTRFLEAVRKI-GLERAVPKRILELMNMPGLTRENVASHLQKYRI 264
                        689*****************.********************************6 PP
2Response_reg776.6e-26241321109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        v++vdD+ + +++++ +l+  +y +v +++++ +al++l+     ++l+++D+ mp++dG+e+ k+ +ee  +lp+++++a ++e+ +l+ l
  GSVIVT01010627001  24 VMVVDDDVICLSIVAGILRTRRY-QVVTVKNPLDALATLRSGSdfFHLVVTDVHMPELDGFEFQKKVQEEF-QLPVVMMSADDKESSMLKGL 113
                        89*********************.999************999999************************99.******************** PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                        +aGa  +++Kp++ ++l +
  GSVIVT01010627001 114 EAGAAFYIVKPVNYDDLKN 132
                        **************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-3416137No hitNo description
SMARTSM004483.9E-2622134IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.32E-3022139IPR011006CheY-like superfamily
PROSITE profilePS5011038.65823138IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-2124132IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.43E-2236137No hitNo description
PROSITE profilePS5129411.279208267IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-25209268IPR009057Homeodomain-like
SuperFamilySSF466891.15E-17209268IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-24212264IPR006447Myb domain, plants
PfamPF002491.3E-6214263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009010anatomyseed
PO:0025501developmental stagefruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MDNEINSPNQ QSHKTITSAA GVNVMVVDDD VICLSIVAGI LRTRRYQVVT VKNPLDALAT  60
LRSGSDFFHL VVTDVHMPEL DGFEFQKKVQ EEFQLPVVMM SADDKESSML KGLEAGAAFY  120
IVKPVNYDDL KNIWQYAVGP RKDNSVDMQD VGPAPEEESP VEKTPDDPVD IESVSSVNEV  180
NQSKRDPKKK ASKRVIEDSG KENSDAVSPK RTKVVWTSAL HTRFLEAVRK IGLERAVPKR  240
ILELMNMPGL TRENVASHLQ KYRIFLRRVA EASNSTGSST GKRIAERTLR SSFATGHPSL  300
LISALQQGFP QLLNQQLVGS LLQPGFPGNI QINDPTLRGA IFPNQQASSS NPRPQLGHGQ  360
GHSMNNQAYL QQQPFGNTNA LPEANGGVMN GANPMQMNQQ QTQARSELVP NAMSNNNFTV  420
FEGSGNIHGV QNMESFNNSH LPPNFDCNNN IAGSGPMGLS NGFNGNYGSI AGNINGNLAL  480
SESVNSGYYA QGAYSSVGLR STNQPPTRFS NITQQNNNPM LLPSLSLLQQ NDLGNGGGDN  540
SYLLDHLMNT TAPMESVSPL QFAESELDEL FQGHLNNLHN NEVLRLVAFL VA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19210270464ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4258570.0AM425857.2 Vitis vinifera contig VV78X211967.26, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010662526.10.0PREDICTED: two-component response regulator ARR2
TrEMBLD7TMX00.0D7TMX0_VITVI; Uncharacterized protein
STRINGVIT_16s0100g00420.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-62response regulator 2