PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010631001
Common NameCBF4
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 179aa    MW: 19857.7 Da    PI: 6.5071
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010631001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.12.4e-095585135
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgk 35
                       + y+GVr++  +g+Wv+e+r+p   +k+ r++lg+
  GSVIVT01010631001 55 PVYRGVRRRN-SGKWVCEVREP---NKTSRIWLGT 85
                       68*****888.8******9998...336******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-55585IPR001471AP2/ERF domain
SMARTSM003800.005956104IPR001471AP2/ERF domain
PROSITE profilePS5103211.8645685IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-135685IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-75685IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MNTTSPPYSD PHPLVCNWDS LNLPDSDGGS EELMLASTHP KKRAGRKKFR ETRHPVYRGV  60
RRRNSGKWVC EVREPNKTSR IWLGTGGGGG VRTPDNVFVM DEEDVFGMPG LLVNMAEGLL  120
MPPPHSVADG YGGDDMAADA DMSLWMNPIS CTEAIFLGPC NILWLNIFFI FSFLKWKI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.13711e-142bud| flower| inflorescence| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2332950.0KR233295.1 Vitis vinifera C-repeat binding transcription factor (CBF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019081607.11e-57PREDICTED: dehydration-responsive element-binding protein 1B isoform X2
TrEMBLA0A0P0GF671e-129A0A0P0GF67_VITVI; C-repeat binding transcription factor
STRINGVIT_16s0100g00380.t011e-55(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6456520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-26C-repeat-binding factor 4