PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010761001
Common NameLOC100853873, VIT_05s0102g00390
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family FAR1
Protein Properties Length: 98aa    MW: 11477 Da    PI: 9.2873
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010761001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.95.7e-071266590
               FAR1 65 klkvkkekdgkwevtkleleHnHela 90
                       ++ vk+ek gkw+vtk++ eHnH+l+
  GSVIVT01010761001  1 MILVKREKLGKWVVTKFVREHNHPLV 26
                       68899999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.4E-5126IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MILVKREKLG KWVVTKFVRE HNHPLVISSG NSRPTPDEKD RKIRELSSEL HRANQRLAAC  60
REQLRTFMTY IEEHTQSLSR TVENVVHNIR EIESEDQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.50155e-79leaf| pedicel
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4654597e-97AM465459.2 Vitis vinifera contig VV78X090921.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003632074.21e-65PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLF6HYS13e-64F6HYS1_VITVI; Uncharacterized protein
STRINGVIT_05s0102g00390.t014e-65(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3376727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-29FAR1 family protein