PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01010768001

Common Name

VIT_05s0102g00470

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

FAR1

Protein Properties

Length: 198aa MW: 22819.1 Da PI: 10.1913

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01010768001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74	3.3e-23	35	120	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ +s+ks+r+g+i++r + C +++ ++ + ++r r gC+a++ vk+ek g+w v k++ +HnH+l+ GSVIVT01010768001 35 FYDEYARRVGFVTRVLSSRKSERDGSIISRGLGCRGGSDNKKARH---LQTQKRDRRREGCTAMILVKREKPGQWIVRKFVRDHNHPLV 120 9*******************************76555555444...588899999****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-21	35	120	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
METSAGGELI SFEGDTVQEP YEGMLFESEG AAKAFYDEYA RRVGFVTRVL SSRKSERDGS 60 IISRGLGCRG GSDNKKARHL QTQKRDRRRE GCTAMILVKR EKPGQWIVRK FVRDHNHPLV 120 VQLQKSRPTL DEKDKKIQEL TAELRVKKRL TSAYREQLLM FVKDVENHNE HLSKKVEVVV 180 DNLKDLEAKR QELLQHR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.16114	0.0	bud\| flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM461853	0.0	AM461853.2 Vitis vinifera contig VV78X007618.9, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002266504.1	1e-143	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1
Refseq	XP_010650579.1	1e-143	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1
Refseq	XP_019075726.1	1e-143	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1
Swissprot	Q9SZL8	6e-19	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	D7U1Q4	1e-142	D7U1Q4_VITVI; Uncharacterized protein
STRING	VIT_05s0102g00470.t01	1e-143	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3376	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-63	FAR1 family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01010768001

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]