PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010836001
Common NameLOC100266402, VIT_05s0102g01120
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 355aa    MW: 39316.8 Da    PI: 6.2925
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010836001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.73.4e-10149207563
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l++e+
  GSVIVT01010836001 149 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAEN 207
                        9*********************************************9998888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.8E-16145209IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.932147210IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-10149203No hitNo description
SuperFamilySSF579598.44E-11149200No hitNo description
PfamPF001708.0E-9149203IPR004827Basic-leucine zipper domain
CDDcd147034.79E-23150199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MPDNPPKNLG HRRAHSEILT LPDDLSFDSD LGVVGGADGP SFSDETEEDL FSMYLDMDKL  60
NSSSATSSFQ MGEPSSAAPL GSASAAMTEN VVARPNDRRV RHQHSQSMDG STSIKPEMLM  120
SGSDENSAAD SKKAMSAAKL AELALIDPKR AKRIWANRQS AARSKERKMR YIAELERKVQ  180
TLQTEATSLS AQLTLLQRDT NGLTAENSEL KLRLQTMEQQ VNLQDALNDA LKEEIQHLKV  240
LTGQTMPNGA PMMNFPQSYG TGAQFYPNNQ AMHTLLTAQQ FQQLQIHSHK QHQLQQHQLH  300
QLQQQQQQIQ QQIQQQQMQQ EQPQQAGDLK IRGSMASPSQ KENASDTNSS AVKE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.49800.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4735810.0AM473581.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X277071.8, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270784.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-142POF21_ARATH; Probable transcription factor PosF21
TrEMBLF6HYW70.0F6HYW7_VITVI; Uncharacterized protein
STRINGVIT_05s0102g01120.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-130bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]