PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011123001
Common NameVIT_07s0104g00090
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 621aa    MW: 69303.6 Da    PI: 5.7355
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011123001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.6e-14413459455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  GSVIVT01011123001 413 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 459
                        7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-589191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625409458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-19411476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.98E-15413463No hitNo description
PfamPF000101.0E-11413458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-19413476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17415464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MAAPPNSRLQ SMLQSAVQSV RWTYSLFWQI CPQQGILVWG DGYYNGAIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYESLS AGETNQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYAKRH HIWLAGANEV DSKVFSRAIL AKSARVQTVV CIPLMDGVVE FGTTEKVQED  180
LGFVQHVKSF FTDHQLHNHP PKPALSEHST SNPATSSDHS QEEEEEEEEE EEEEEEEEEA  240
ESDSEAETGR NNRRLIQLEM SEGIRLGSPD DGSNNLDSDF HMLAVSQPGS SPPPQPPTGP  300
PPLDELSHED THYSQTVSTI LQHQPNRWSE SSSSGCIAPY SSQSAFAKWT TRCDHHHHPM  360
AVEGTSQWLL KYILFSVPFL HTKYRDENSP KSRDGDSAGR FRKGTPQDEL SANHVLAERR  420
RREKLNERFI ILRSLVPFVT KMDKASILGD TIEYVKQLRK KIQDLEARTR QMEVEQRSRG  480
SDSVRSKEHR IGSGGVDRNR AVVAGSDKRK LRIVEGSTGA KPKVVDSPPA AVEGGTTTVE  540
VSIIESDALL EMQCPYREGL LLDVMQMLRD LRLETTTVQS SLTNGVFVAE LRAKVKENAS  600
GKKASIMEVK RAINQIIPQC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-23819112192Transcription factor MYC3
4rqw_B9e-23819112192Transcription factor MYC3
4rru_A1e-22817951219Transcription factor MYC3
4rs9_A9e-23819112192Transcription factor MYC3
4ywc_A1e-22817951219Transcription factor MYC3
4ywc_B1e-22817951219Transcription factor MYC3
4yz6_A9e-23819112192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1417422ERRRRE
2418423RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4471720.0EU447172.1 Vitis vinifera bHLH-like DNA binding protein (MYC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268182.10.0uncharacterized protein LOC100251098
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLF6HQ810.0F6HQ81_VITVI; Uncharacterized protein
STRINGVIT_07s0104g00090.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP52261116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-179bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]