PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011168001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 173aa    MW: 20304.1 Da    PI: 8.8026
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011168001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.23e-2518100186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W+ qe+++ + +r e+++++ ++k++k lWe +++km+e+g++rs+ qCk+kw+nl +ryk ++++e +     ++++p++++l+
  GSVIVT01011168001  18 QWSIQETKEFLMIRAELDRTFMETKRNKLLWEVIANKMKEKGYNRSADQCKCKWKNLVTRYKGCETMEPEA---MRQQFPFYNELQ 100
                        7********************************************************************95...56689*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.19E-261782No hitNo description
PfamPF138373.6E-2118102No hitNo description
PROSITE profilePS500907.481975IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEGHHISVHI DTGDRFPQWS IQETKEFLMI RAELDRTFME TKRNKLLWEV IANKMKEKGY  60
NRSADQCKCK WKNLVTRYKG CETMEPEAMR QQFPFYNELQ AIFTARMQRM LWIEAEGGAK  120
KKGVQLSSED EDENEESEGE KGSSKKKKKG KTTKADERRH SMGMFSFEWG YV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A6e-131598386DNA binding protein GT-1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.197400.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4487191e-130AM448719.1 Vitis vinifera contig VV78X184874.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264016.12e-91PREDICTED: trihelix transcription factor GT-3b
SwissprotQ9SDW05e-55TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLF6H6T62e-89F6H6T6_VITVI; Uncharacterized protein
STRINGVIT_08s0105g00400.t013e-90(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP22621535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.14e-56Trihelix family protein