PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011330001
Common NameVIT_15s0107g00380
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 434aa    MW: 48789.4 Da    PI: 5.6095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011330001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12229273554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          + E++RR+++N++++ Lr+l+P++     +K + a+++  A+eYI++L
  GSVIVT01011330001 229 SFATEKQRREHLNDKYNALRSLVPNP-----TKSDRASVVGDAIEYIREL 273
                        5689**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.939224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.57E-10227277No hitNo description
SuperFamilySSF474592.02E-14228290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-10229273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-12230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-12231282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MCRKITRPRR MYVYEENACF DGTKSVAEGD DEGFSQSVAP PPTNNSFEDS TNMRVSMEDA  60
SATMEIELHQ QLAFDMDQQC YNSNNDGNDS NQVFSYEMQE MGFNHHQQQQ EDPLLLQQHQ  120
AEMQNAHQNF SAAYPPTPDL LNLFHLPRCT PSSLLPNSSI SFTNPDSSAT AASGILYDPL  180
FHLNLPPQPP VGGGYGDGDD HRQFDNGVLK FTRDMACIGK GREGKGTKSF ATEKQRREHL  240
NDKYNALRSL VPNPTKSDRA SVVGDAIEYI RELLRTVNEL KLLVEKKRCG RERSKRHKTE  300
DESTGDVKSS SSIKPEPDQS YNESLRSSWL QRKSKDTEVD VRIIDDEVTI KLVQRKKINC  360
LLFVSKILDE LQLDLHHVAG GHVGDYYSFL FNTKIYEGSS VYASAIANKL IEVVDRQYAA  420
IPIPIPIPPT SSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4630400.0AM463040.1 Vitis vinifera contig VV78X020046.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661301.10.0PREDICTED: transcription factor bHLH91
TrEMBLF6I1S30.0F6I1S3_VITVI; Uncharacterized protein
STRINGVIT_15s0107g00380.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26591431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-102bHLH family protein