PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01011356001

Common Name

VIT_14s0108g00120

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

WRKY

Protein Properties

Length: 503aa MW: 53916.9 Da PI: 6.922

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01011356001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.6	1.7e-30	171	230	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ GSVIVT01011356001 171 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILITTYEGTHNHP 230 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.7E-32	156	232	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-27	164	232	IPR003657	WRKY domain
PROSITE profile	PS50811	28.323	166	232	IPR003657	WRKY domain
SMART	SM00774	1.4E-36	171	231	IPR003657	WRKY domain
Pfam	PF03106	5.7E-27	172	230	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MGEVREENER LKTMLEKIGK DYKSLQLQVF DILQQESSKR PVDSAPAIDE ESKELELVSL 60 CLGRSSPTDG KRDGKSSIAS KAKEDDDELN AGLTLGLDSK FQVSKLDVTE FASNSSPTEN 120 SIEEVKEEEA GETWPPSKVL KTMRTGDEVS QQSHVKRARV SVRARCDTLT MNDGCQWRKY 180 GQKIAKGNPC PRAYYRCTVA PSCPVRKQVQ RCAEDMSILI TTYEGTHNHP LPMSATAMAS 240 TTSAAASMLI SGSSASQPGL GSSPAATELH GLNFSLPDNM RTRQLYAANS SPFPTITLDL 300 TTTASSSSHF SRFSSSFNSS TPRFPSTSLS FSSSESNSVP TVWGNGCLNY GILPHNKAQI 360 GSLNLGRQPP EHFHQPYMEK NGQAPIQQSL TETLTKVITS DPSFRTVIAA ALSSMVSSST 420 GQPNPGAGES LGQNLKWGET TQAISTNPLS QNGKGCAPGY LNASSSSNSQ TGNSILLQPP 480 FPVSIPRSGT SGSAAENRDQ NN*

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MGEVREENER LKTMLEKIGK DYKSLQLQVF DILQQESSKR PVDSAPAIDE ESKELELVSL  60
CLGRSSPTDG KRDGKSSIAS KAKEDDDELN AGLTLGLDSK FQVSKLDVTE FASNSSPTEN  120
SIEEVKEEEA GETWPPSKVL KTMRTGDEVS QQSHVKRARV SVRARCDTLT MNDGCQWRKY  180
GQKIAKGNPC PRAYYRCTVA PSCPVRKQVQ RCAEDMSILI TTYEGTHNHP LPMSATAMAS  240
TTSAAASMLI SGSSASQPGL GSSPAATELH GLNFSLPDNM RTRQLYAANS SPFPTITLDL  300
TTTASSSSHF SRFSSSFNSS TPRFPSTSLS FSSSESNSVP TVWGNGCLNY GILPHNKAQI  360
GSLNLGRQPP EHFHQPYMEK NGQAPIQQSL TETLTKVITS DPSFRTVIAA ALSSMVSSST  420
GQPNPGAGES LGQNLKWGET TQAISTNPLS QNGKGCAPGY LNASSSSNSQ TGNSILLQPP  480
FPVSIPRSGT SGSAAENRDQ NN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	158	232	1	74	WRKY transcription factor 1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269\|PubMed:24884371}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM434220	0.0	AM434220.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X157796.9, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002277221.2	0.0	PREDICTED: probable WRKY transcription factor 72 isoform X1
Refseq	XP_010661032.1	0.0	PREDICTED: probable WRKY transcription factor 72 isoform X1
Swissprot	A0A3Q7GFB5	1e-113	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	D7SX70	0.0	D7SX70_VITVI; Uncharacterized protein
STRING	VIT_14s0108g00120.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	8e-72	WRKY DNA-binding protein 72

Link Out ? help Back to Top
Phytozome	GSVIVT01011356001

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]