PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011380001
Common NameLOC100252480, VIT_14s0108g00420
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 91aa    MW: 10239.6 Da    PI: 9.3627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011380001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.3e-0721571854
                       HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                       +  ++L++llP+ + + +s K+s + +L+++++YI+sL
  GSVIVT01011380001 21 ELVSKLQQLLPEiR-NRRSDKVSASKVLQETCNYIRSL 57
                       56689*******77.89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.874357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-91776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-81871IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-52157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRSRQSG SSRISDDQII ELVSKLQQLL PEIRNRRSDK VSASKVLQET CNYIRSLHRE  60
VDDLSERLSR LLATVDADSP EAAIIRSLIM *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.59141e-153bud| fruit
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4413858e-81AM441385.2 Vitis vinifera contig VV78X155993.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283094.15e-56PREDICTED: transcription factor PRE6
SwissprotQ9LJX18e-42PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A438D7D91e-54A0A438D7D9_VITVI; Transcription factor PRE5
TrEMBLD7SX911e-54D7SX91_VITVI; Uncharacterized protein
STRINGVIT_14s0108g00420.t012e-55(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18771240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-34bHLH family protein