PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011413001
Common NameVIT_14s0108g00750
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ZF-HD
Protein Properties Length: 239aa    MW: 26821.6 Da    PI: 9.7053
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011413001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.21.1e-3453109358
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                         v YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++
  GSVIVT01011413001  53 VVAYKECLKNHAASLGGHALDGCGEFMPSPTATsADPTSLKCAACGCHRNFHRREPD 109
                        689***************************999899******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2454113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.7E-2954108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.6E-3256107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.40156107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.78E-19120193IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-30122193IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-24132189IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MNNIVKHFFP EAETETPTQI QPRKGLSLTN GVLKRHQQHH HHHHHHFAAP QVVVAYKECL  60
KNHAASLGGH ALDGCGEFMP SPTATSADPT SLKCAACGCH RNFHRREPDD PPPTTHNAPP  120
ISSSPASGAN GRKRFRTKFS QGQKEKMFEF AERVGWKMQK RDEELVAEFC NEVGVDKGVL  180
KVWMHNNKNT FGKRDVNGSR TIPLYKHLRI FSAFLAAYFI ELMVSPFLFN LTLLYLSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-201331901875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.174840.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4585751e-167AM458575.2 Vitis vinifera contig VV78X161277.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283533.11e-112PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ9LXG01e-64ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLF6H5T21e-118F6H5T2_VITVI; Uncharacterized protein
STRINGVIT_14s0108g00750.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.14e-60homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]