PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011632001
Common NameLOC100245838, VIT_01s0011g05970
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HSF
Protein Properties Length: 272aa    MW: 31703.2 Da    PI: 9.3598
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011632001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.4e-35141052102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Flkk ye+++de+ + +isw+ +++sfv+ d++ef++++LpkyFkh+nf+SF+RQLn+YgF+k+++++         weF+++ F +g+k+l
  GSVIVT01011632001  14 FLKKCYEMVDDEASDAIISWNLSNDSFVIRDTTEFSHQLLPKYFKHNNFSSFMRQLNIYGFRKIDTDH---------WEFANEGFIRGQKHL 96 
                        9********************888******************************************99.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k+
  GSVIVT01011632001  97 LKNIRRRKQ 105
                        *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-36598IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.4E-5410103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.3E-3411103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.1E-181437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.7E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-185264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVKSTEAGSV VPPFLKKCYE MVDDEASDAI ISWNLSNDSF VIRDTTEFSH QLLPKYFKHN  60
NFSSFMRQLN IYGFRKIDTD HWEFANEGFI RGQKHLLKNI RRRKQLQGQD KQKSSHQRDK  120
SAGACEEIEA SKLWNDVEIL KTDRNALTQQ LVKLRQHQET AESKLLVLRE RLQGMEKNQQ  180
QMLSFLVMAM QSPEFLVQFM QPKEKNWRMA EVGKNMLERR AENGEPAASD VMIVRYQPPM  240
DETPKPLPIP TSNSEKSLDQ IRRNPWNLIF S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-26210316129Heat shock factor protein 1
5d5v_B3e-26210316129Heat shock factor protein 1
5d5v_D3e-26210316129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.96380.0bud| flower| inflorescence| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8698160.0KR869816.1 Vitis pseudoreticulata transcription factor HsfA8a mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010650396.10.0PREDICTED: heat stress transcription factor A-8
RefseqXP_010650423.10.0PREDICTED: heat stress transcription factor A-8
SwissprotQ9S7U54e-90HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A0U3K0T60.0A0A0U3K0T6_VITPS; Transcription factor HsfA8a
TrEMBLA0A438DGM60.0A0A438DGM6_VITVI; Heat stress transcription factor A-8
TrEMBLF6HFC30.0F6HFC3_VITVI; Uncharacterized protein
STRINGVIT_01s0011g05970.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1084768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.12e-92heat shock transcription factor A8