PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011738001
Common NameVITISV_036884
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WOX
Protein Properties Length: 338aa    MW: 38432.8 Da    PI: 6.3225
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011738001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox733.4e-2385144357
                        --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        +R+++t+eql++Leel+++ +r+p+ae+++++A++l    +++ ++V++WFqN++a+e++
  GSVIVT01011738001  85 SRWNPTPEQLQALEELYRRgTRTPTAEQIQQIAAQLrlfgKIEGKNVFYWFQNHKARERQ 144
                        7*****************99**************************************97 PP
2Wus_type_Homeobox112.62.1e-3684146365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+i+a+L+ +Gkie+kNVfyWFQN+kaRerqk+
  GSVIVT01011738001  84 SSRWNPTPEQLQALEELYRRGTRTPTAEQIQQIAAQLRLFGKIEGKNVFYWFQNHKARERQKR 146
                        68***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1381149IPR009057Homeodomain-like
SMARTSM003893.0E-882149IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-1085144IPR009057Homeodomain-like
PfamPF000468.0E-2185144IPR001356Homeobox domain
CDDcd000861.05E-786146No hitNo description
PROSITE profilePS5007111.98590145IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MWTMDSSDSS DLTMSDSFHG RKLRPLVPRP NASVLPKITV NSTVAISPCI SHLHGTDLFA  60
LNHHLGGTSD QQRKTDFNTQ PFGSSRWNPT PEQLQALEEL YRRGTRTPTA EQIQQIAAQL  120
RLFGKIEGKN VFYWFQNHKA RERQKRRREL ESDSEEQQRD NGSLERKESV LRRTCIEVEQ  180
TKNWVVPSSN CSTLSEESVS IQRAAVAESR TDVWFQFEER ELQQTRSTVE RQATWQLMGL  240
TSSPPSQLID TITTTTVAEA LNTIYPKQKP LSPQSLRPNT HLEHETRESQ TLQLFPVQGG  300
QSFNAANEII SVAEMENGLP ITTIDTNFTP NQFFEFL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4631440.0AM463144.2 Vitis vinifera contig VV78X078650.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280774.20.0PREDICTED: WUSCHEL-related homeobox 1
TrEMBLA0A438C1180.0A0A438C118_VITVI; WUSCHEL-related homeobox 1
STRINGVIT_01s0011g05020.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8416716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.19e-45WUSCHEL related homeobox 1