PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011819001
Common NameVIT_01s0011g04260
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 399aa    MW: 45066.4 Da    PI: 7.5512
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011819001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.31.4e-14315340126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +ktelC+ ++++GtC+yGd C+FaHg
  GSVIVT01011819001 315 FKTELCNKWQESGTCPYGDHCQFAHG 340
                        79***********************8 PP
2zf-CCCH18.82.9e-06353377125
                        --S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                        ykte Cr  +++  C+yG rC+F H
  GSVIVT01011819001 353 YKTEVCRMVLAGDACPYGHRCHFRH 377
                        9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.0E-19309347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.87E-11311346IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.615314342IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-9314341IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-11315340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-11348381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-8348383IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-5352379IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821352380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MMWAIAGQWL KGGSVSNFLS PPLSLSAEQE KKLSPLFDTW FSKNPTQMQK DISISPGGIK  60
FFSSPAGNRS DGLGFPSLYS SIFSPKPSLS NSVSLTPSEY STDEDVNNNS NNNSTPTSID  120
NVQALEVPYS PPSRLIYEHQ DLINRHNLCL NHLRETAQEA EVLRHENSNL RIANRDLNKR  180
LSLLIQNSIQ NRFVNSEYSS SRSMADEFRR LGLGDGNETR SWDDEISNES PTSVIESDRV  240
ERIDVERITL PKSISVRSNG YLKMSQPGTS EGGRTRIPNR LRTTSPLNGT QKVYVRGVKK  300
EEEPVELEVY NQGMFKTELC NKWQESGTCP YGDHCQFAHG IEELRPVIRH PRYKTEVCRM  360
VLAGDACPYG HRCHFRHALT EQERFMGQLQ PRAIKLDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-23315381470Butyrate response factor 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.49300.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4539780.0AM453978.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X001301.9, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010662958.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-80C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLD7T8Y60.0D7T8Y6_VITVI; Uncharacterized protein
STRINGVIT_01s0011g04260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-81C3H family protein