PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01011873001

Common Name

LOC100264677, VIT_01s0011g03720

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

bHLH

Protein Properties

Length: 242aa MW: 26953.1 Da PI: 7.7879

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01011873001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.4	2.6e-08	133	180	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + k + a +L ++Y++sLq GSVIVT01011873001 133 SHSLAERVRREKINEKLRCLQDLVPGC----YKTMGMAVMLDVIINYVQSLQ 180 8*************************8....355888888888888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-16	127	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.02E-11	127	184	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.4E-16	129	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.218	129	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-5	133	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.1E-8	135	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:2000488	Biological Process	positive regulation of brassinosteroid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MNSNMELMNN RSAPENSHMN GHGFMAFSNV GFSIHHQQEF PVNFRDNTQS PVHAGGLSAV 60 QVLQFSSQPG DFGQETKTGK VNFVSSPPAS GSEFLGDNKN LGGRKRKRSN ERENNKPREV 120 IHVRAKRGQA TDSHSLAERV RREKINEKLR CLQDLVPGCY KTMGMAVMLD VIINYVQSLQ 180 NQIEFLSMKL SAASTFYDFN SSEAEALETM QGTNAYEVHE VERSVKEGYG GPSHLHSTWP 240 F*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.14218	0.0	flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ394803	0.0	FQ394803.1 Vitis vinifera clone SS0AFA19YK12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002279412.1	0.0	PREDICTED: transcription factor bHLH75
Swissprot	A4D998	6e-59	BH075_ARATH; Transcription factor bHLH75
TrEMBL	A0A438ELB2	0.0	A0A438ELB2_VITVI; Transcription factor bHLH75
TrEMBL	F6HFN6	0.0	F6HFN6_VITVI; Uncharacterized protein
STRING	VIT_01s0011g03720.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	3e-58	bHLH family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01011873001
Entrez Gene	100264677

Publications ? help Back to Top
Khan M, et al. Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling. Nat Commun, 2014. 5: p. 4687 [PMID:25134617] Eremina M, et al. Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991 [PMID:27655893] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776]