PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011896001
Common NameLOC100259299, VIT_01s0011g03530
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LBD
Protein Properties Length: 242aa    MW: 26846.7 Da    PI: 9.5227
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011896001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.71.6e-274104196
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C++dC++ p++     p+ q++++ +++k++G++ +++l++a p++ r+++++sl++eA+ r+ +P+yG+vg+++++ ++ 
  GSVIVT01011896001   4 SCNGCRVLRKACSQDCIIKPCLewiknPDFQANATLFLAKFYGRAGLINLINAGPQQLRPAIFRSLLWEACGRVVNPIYGSVGLLWSGDWNR 95 
                        6*****************************************************************************************99 PP

             DUF260  88 eqlkaelal 96 
                        +  +++++l
  GSVIVT01011896001  96 CLDAVDAVL 104
                        988877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.9073109IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-22497IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRTSCNGCRV LRKACSQDCI IKPCLEWIKN PDFQANATLF LAKFYGRAGL INLINAGPQQ  60
LRPAIFRSLL WEACGRVVNP IYGSVGLLWS GDWNRCLDAV DAVLRGVPIA RKPSEATSSS  120
PSDHPVKAYD IRHVSKDFKF PTTENLNRVT APAPKPFKRS SKSKPKPQAS LVFDFATKPA  180
ADQSDKFCDV RLPWPSSHEF NQTPSHEPSL GYHLEWLTKL DTESDKSKVK LELTLGSGTN  240
F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3828800.0FQ382880.1 Vitis vinifera clone SS0ABG3YK21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282586.11e-180PREDICTED: LOB domain-containing protein 42
SwissprotQ9CA301e-69LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A438ECJ91e-178A0A438ECJ9_VITVI; LOB domain-containing protein 42
TrEMBLD7T9481e-178D7T948_VITVI; Uncharacterized protein
STRINGVIT_01s0011g03530.t011e-179(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-69LOB domain-containing protein 41