PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011929001
Common NameVIT_01s0011g03230
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 454aa    MW: 49609.6 Da    PI: 6.0545
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011929001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.9e-10167205543
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                        k  rr+++NReAAr+sR+RKka++++Le    +L++  +
  GSVIVT01011929001 167 KTLRRLAQNREAARKSRLRKKAYVQQLECSQLKLTQLEQ 205
                        788************************976555555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.5E-8161210No hitNo description
SMARTSM003383.0E-7163234IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.082165209IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-7167210No hitNo description
PfamPF001709.8E-7167206IPR004827Basic-leucine zipper domain
CDDcd147081.94E-22167219No hitNo description
PROSITE patternPS000360170185IPR004827Basic-leucine zipper domain
PfamPF141441.3E-31252325IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MQSFKAAPTA SDIGDESSRN QTRFPDLGEL EQSAAFHHDD AVDLSSSAMF RLKSGNVGVV  60
SPLHFGGLNT NIGPSDMVST SGTGVVDTGQ LMFSKGTAET ATATVASLGN GHFENWGESG  120
MGDNSQQTDT STDVDTDDKN QYHGVQHGAL VAVDSMDQSK GKTGDQKTLR RLAQNREAAR  180
KSRLRKKAYV QQLECSQLKL TQLEQELQRA RQQGVFIATG FSGDQSHSMG GNGALAFDMD  240
YARWLDEHQR LINDLRSAVN SHVGDNELRI LVDGVMAHYD EIFRLKSMGA KSDVFHMLSG  300
MWKTPAERCF MWLGGFRSSE LLKILGNQLE PLTDQQLMGI CNLQQSSQQA EDALSQGMEA  360
LQQSLVETLS SNSLGPAGSG NVADYMGQMA IAMGKLATLE NFLHQADLLR QQTLQQMHRI  420
LTTRQAARAL LVISDYMSRL RALSSLWLAR PRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4421381e-150AM442138.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X255602.8, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647869.10.0PREDICTED: transcription factor TGA2.3
RefseqXP_019076430.10.0PREDICTED: transcription factor TGA2.3
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLD7T9780.0D7T978_VITVI; Uncharacterized protein
STRINGVIT_01s0011g03230.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-149bZIP family protein