PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01012110001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 29674.6 Da    PI: 7.6636
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01012110001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-291059251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       rien++nrqvtfskRr g++KKA+ELSvLCda++ +iifsstgkl ey+s
  GSVIVT01012110001 10 RIENNTNRQVTFSKRRGGLFKKAHELSVLCDAQIGLIIFSSTGKLSEYCS 59
                       8***********************************************96 PP
2K-box77.24.4e-26881741399
              K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          e+l++e++++++e++nLq ++ ++ G+dL+s+++k+L++LeqqLe+s+kk+R++K++ll +qi++lq+k k+l++en+++ + ++
  GSVIVT01012110001  88 AIEQLHNEITRMRNETHNLQLSLQRYTGDDLSSIQFKDLEELEQQLEHSIKKVRARKYQLLQQQIDNLQRKAKMLEDENEQICHWIQ 174
                        56899***************************************************************************9876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.034161IPR002100Transcription factor, MADS-box
CDDcd002654.21E-44278No hitNo description
SuperFamilySSF554551.31E-32281IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014868.3E-2588173IPR002487Transcription factor, K-box
PROSITE profilePS5129715.36489179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRGKIAIRR IENNTNRQVT FSKRRGGLFK KAHELSVLCD AQIGLIIFSS TGKLSEYCSL  60
PSSMEQIIRR YQRVTGTHIS KQDNRVGAIE QLHNEITRMR NETHNLQLSL QRYTGDDLSS  120
IQFKDLEELE QQLEHSIKKV RARKYQLLQQ QIDNLQRKAK MLEDENEQIC HWIQEKQQVA  180
AMEQQQLGIE LKPVEEQQVM EQFPFSGEEQ PNSVLQLATL SPHFYPYRLQ PTHPNLQDLT  240
LQYPGFGSIG TTPTND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20186184MEF2C
5f28_B1e-20186184MEF2C
5f28_C1e-20186184MEF2C
5f28_D1e-20186184MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4292951e-135AM429295.2 Vitis vinifera contig VV78X018015.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648959.10.0PREDICTED: MADS-box protein FBP24 isoform X1
RefseqXP_010648963.10.0PREDICTED: MADS-box protein FBP24 isoform X1
RefseqXP_010648968.10.0PREDICTED: MADS-box protein FBP24 isoform X1
RefseqXP_010648971.10.0PREDICTED: MADS-box protein FBP24 isoform X1
SwissprotQ9ATE55e-87FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A438E3630.0A0A438E363_VITVI; MADS-box protein FBP24
STRINGVIT_01s0011g01560.t011e-156(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.27e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]