PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01012150001
Common NameVIT_01s0011g01190
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 222aa    MW: 26120.1 Da    PI: 5.8495
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01012150001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171865148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEd ll ++v ++G g+Wk I ++ g++R++k+c++rw++yl
  GSVIVT01012150001 18 KGTWSEEEDRLLREYVDKYGQGNWKHITSKTGLRRCRKSCRLRWLNYL 65
                       799*******************************************97 PP
2Myb_DNA-binding49.31.1e-1571116148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++  +Ed+l+++++++lG++ W++Ia +++ gRt +++k++w++yl
  GSVIVT01012150001  71 RGSFGVDEDDLIIRLHRLLGNR-WTLIAGRIP-GRTSNDIKNYWNTYL 116
                        789999****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.7681369IPR017930Myb domain
SuperFamilySSF466893.24E-2916112IPR009057Homeodomain-like
SMARTSM007175.1E-151767IPR001005SANT/Myb domain
PfamPF002492.4E-161865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-231972IPR009057Homeodomain-like
CDDcd001679.94E-112065No hitNo description
SMARTSM007179.1E-1570118IPR001005SANT/Myb domain
PROSITE profilePS5129420.53970120IPR017930Myb domain
PfamPF002496.3E-1571116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2373120IPR009057Homeodomain-like
CDDcd001673.34E-977116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0004709anatomyaxillary bud
PO:0025532developmental stagebud burst stage
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MKRREREDHH HSNTALRKGT WSEEEDRLLR EYVDKYGQGN WKHITSKTGL RRCRKSCRLR  60
WLNYLRPDIK RGSFGVDEDD LIIRLHRLLG NRWTLIAGRI PGRTSNDIKN YWNTYLSKKI  120
QSEADKSAGL VKHNTCTSAV HSETLGSEFE TCSEQKQGDE EEEDTVSFWR RLLLEGEYRE  180
LDLRVKNKEI LQVEHEEEDD DDLFQGLDDL LHDVDILDCF A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251312022128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4665361e-120AM466536.2 Vitis vinifera contig VV78X254327.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019078505.11e-161PREDICTED: transcription factor WER-like
SwissprotQ9FNV95e-51MY113_ARATH; Transcription factor MYB113
TrEMBLD7T9Q41e-159D7T9Q4_VITVI; Uncharacterized protein
STRINGVIT_01s0011g01190.t011e-160(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-53myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]