PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01012250001
Common NameVIT_01s0011g00100, VITISV_013455
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27991.8 Da    PI: 8.8438
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01012250001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.55.7e-31959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  GSVIVT01012250001  9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59
                       79***********************************************96 PP
2K-box110.51.8e-36761742100
              K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                        ++++ ++++ + + +++ e++kLk++ie Lqr+qRh+lGedL+sLslkeLq+LeqqL+++lk+iRs+Kn+l++e+i+elq+kek++qe+n++
  GSVIVT01012250001  76 AERQLTATDPESQGNWSLEYSKLKAKIELLQRSQRHFLGEDLDSLSLKELQNLEQQLDTALKHIRSRKNQLMYESISELQRKEKAMQEQNNM 167
                        55666666777789****************************************************************************** PP

              K-box  94 Lrkklee 100
                        L k+++e
  GSVIVT01012250001 168 LAKEIKE 174
                        ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.45161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-35291IPR002100Transcription factor, MADS-box
CDDcd002657.70E-42279No hitNo description
PRINTSPR004042.7E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-3187172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.69188178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD  60
SCMEKILDRY ERYSYAERQL TATDPESQGN WSLEYSKLKA KIELLQRSQR HFLGEDLDSL  120
SLKELQNLEQ QLDTALKHIR SRKNQLMYES ISELQRKEKA MQEQNNMLAK EIKEKEKTVA  180
QQTHWEQQNH GLNTSSFLLP QQLPCLNMGG TYQGEAHGAR RNELDLTLEP IYPSHLGCFT  240
T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-23184183MEF2 CHIMERA
6byy_B6e-23184183MEF2 CHIMERA
6byy_C6e-23184183MEF2 CHIMERA
6byy_D6e-23184183MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.181440.0inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5387460.0AY538746.1 Vitis vinifera AP1-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268210.11e-179apetala1
SwissprotQ6E6S70.0AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A061EAI91e-145A0A061EAI9_THECC; K-box region and MADS-box transcription factor family protein
STRINGVIT_01s0011g00100.t011e-179(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-120MIKC_MADS family protein
Publications ? help Back to Top
  1. Calonje M,Cubas P,Martínez-Zapater JM,Carmona MJ
    Floral meristem identity genes are expressed during tendril development in grapevine.
    Plant Physiol., 2004. 135(3): p. 1491-501
    [PMID:15247405]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]