PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01012523001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GATA
Protein Properties Length: 189aa    MW: 20541.5 Da    PI: 4.0493
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01012523001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.5e-162258135
               GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  GSVIVT01012523001 22 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANKGT 58
                       *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-91669IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-122079No hitNo description
Gene3DG3DSA:3.30.50.102.3E-152063IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.76E-152165No hitNo description
PfamPF003208.3E-142258IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MATGNWDPSS GTPCPEYVFR RCQHCGISEK STPAMRRGPA GPRSLCNACG LMWANKGTLR  60
DLSKGSRMIP FGQDELETSD DIKPVTMERE KAYGNHDELG SSEEMKPVPL ESGNPTTGQQ  120
NEQDLLETAV ALVDHLPVPV DNSSINPDEQ ENTEVLANVS GTDFEIPTNF DEQVDVGDSN  180
MATDWPEN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4326058e-55AM432605.2 Vitis vinifera contig VV78X221945.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010645171.11e-138PREDICTED: GATA transcription factor 24 isoform X2
TrEMBLA0A2I4F5G64e-75A0A2I4F5G6_JUGRE; GATA transcription factor 19-like
STRINGXP_008237241.17e-73(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.24e-24ZIM-LIKE 2