PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01012707001
Common NameVIT_10s0116g01590
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 49aa    MW: 5526.56 Da    PI: 10.1292
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01012707001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like31.83.3e-101203655
            G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                       m+vkgL+++h+kSHLQ+YR+
  GSVIVT01012707001  1 MDVKGLSISHIKSHLQMYRS 20
                       9******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-9122IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 49 aa     Download sequence    Send to blast
MDVKGLSISH IKSHLQMYRS MKHEQIVQGI TSTLLIHGHP LHCRVSMF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4740682e-49AM474068.2 Vitis vinifera contig VV78X087148.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLE0CVR75e-26E0CVR7_VITVI; Uncharacterized protein
STRINGVIT_10s0116g01590.t018e-27(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.13e-08G2-like family protein