PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01012778001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 188aa    MW: 21657.1 Da    PI: 10.7771
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01012778001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-151461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W++eEd++l++++++ G g W++ ++  g+ R++k+c++rw +yl
  GSVIVT01012778001 14 RGSWSKEEDDRLIHYIRLNGHGFWRSLPKAAGLLRCGKSCRLRWINYL 61
                       89******************************99************97 PP
2Myb_DNA-binding53.36.5e-1767111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg++  +Edel+++++k+lG++ W++Ia +++ gRt++++k++w+++
  GSVIVT01012778001  67 RGNFAIDEDELIIKLHKLLGNK-WSLIAGRLP-GRTDNEIKNHWNTH 111
                        6777789***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-21563IPR009057Homeodomain-like
PROSITE profilePS5129413.81961IPR017930Myb domain
SMARTSM007171.6E-111363IPR001005SANT/Myb domain
SuperFamilySSF466891.31E-2713108IPR009057Homeodomain-like
PfamPF002492.6E-141461IPR001005SANT/Myb domain
CDDcd001677.38E-91661No hitNo description
PROSITE profilePS5129427.55162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-2664117IPR009057Homeodomain-like
SMARTSM007177.2E-1466114IPR001005SANT/Myb domain
PfamPF002491.1E-1467111IPR001005SANT/Myb domain
CDDcd001675.39E-1173112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGRKPCCDKA HTNRGSWSKE EDDRLIHYIR LNGHGFWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDVKRGNF AIDEDELIIK LHKLLGNKWS LIAGRLPGRT DNEIKNHWNT HIRRKLIMLF  120
VKFRTVTSNI SFLSNLKGLN CMDQSQHYLS KPQKNLLQKV ELENSNLSLN LSQGFTNPIK  180
SLPIPSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4423791e-101AM442379.2 Vitis vinifera contig VV78X123743.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665255.11e-82PREDICTED: myb-related protein 308
SwissprotP813932e-71MYB08_ANTMA; Myb-related protein 308
TrEMBLF6GYT32e-81F6GYT3_VITVI; Uncharacterized protein
STRINGVIT_18s0117g00200.t013e-82(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-72myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]