PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01012789001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

FAR1

Protein Properties

Length: 647aa MW: 72062.3 Da PI: 6.3004

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01012789001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.7	1.2e-25	134	220	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk++GF+vrk k +k+ +g+ ++r++ Cs+eg+r++++++ + ++ +r etrtgC+a+++v++e +++w++t+l+leHnH+l GSVIVT01012789001 134 EFYKDYAKKTGFTVRKGKIHKQ-PDGTLKWRRLLCSCEGFRAKKQSN-QGTKYQRLETRTGCEAQMQVTLE-NEQWVITNLQLEHNHSLK 220 6***************9998.8899*************999.99999**************.9************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-22	134	220	IPR004330	FAR1 DNA binding domain
Pfam	PF05278	3.7E-9	462	604	IPR007942	Phospholipase-like

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence Send to blast
MAGAPEHRSR FDQDITPRSA GRHGSTGFRP DVSGAQQFPF QEYGTSVNCE SDNTSIDWLY 60 KCLFPQDNPE VDNFQEGYLA LSDFANDGPE MDQTCNEDGC EIKTSVNVNE EKPEDNDQKP 120 QSGMMFSSVI QAEEFYKDYA KKTGFTVRKG KIHKQPDGTL KWRRLLCSCE GFRAKKQSNQ 180 GTKYQRLETR TGCEAQMQVT LENEQWVITN LQLEHNHSLK NSNGSSDKSI QDALTRPSEK 240 LEGALEADNV CPKHQLKQLK PQPVDSRRAK GETLLASAEA EDRDKTLRDG PRFIGNSSRL 300 LKENHNEQLF EEATKLQSIF HLHPKNQGYL PQQTQEDSVS RYSEQIISEV ETHCNYVQNA 360 SDRLTMEERS LPVAKSADGE STIYSAQMPT TNDASHWSRG SAVSIASSTV PTPTLPITTI 420 TSAGTPAAGS SSPHLPCLQD KRSGASRDQG KQCASFGGVN TIVQVGSGVS HTSESIWQQI 480 LTKYGDITAK STVTSPEFVA FVKQSILKIV ELMHNNTARG LSDENISTIG RILGDLERVE 540 VKVDWLRTRF VAVGHLIDYA KAKDNRDMIL RRFNEKRAQV AQLQLHLTQL QGKLDEAEAS 600 LQELQHQKSI VSSYLEPNNH QPLIFFSAFF SNSSPLCILS TMVIHI*

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence Send to blast

MAGAPEHRSR FDQDITPRSA GRHGSTGFRP DVSGAQQFPF QEYGTSVNCE SDNTSIDWLY  60
KCLFPQDNPE VDNFQEGYLA LSDFANDGPE MDQTCNEDGC EIKTSVNVNE EKPEDNDQKP  120
QSGMMFSSVI QAEEFYKDYA KKTGFTVRKG KIHKQPDGTL KWRRLLCSCE GFRAKKQSNQ  180
GTKYQRLETR TGCEAQMQVT LENEQWVITN LQLEHNHSLK NSNGSSDKSI QDALTRPSEK  240
LEGALEADNV CPKHQLKQLK PQPVDSRRAK GETLLASAEA EDRDKTLRDG PRFIGNSSRL  300
LKENHNEQLF EEATKLQSIF HLHPKNQGYL PQQTQEDSVS RYSEQIISEV ETHCNYVQNA  360
SDRLTMEERS LPVAKSADGE STIYSAQMPT TNDASHWSRG SAVSIASSTV PTPTLPITTI  420
TSAGTPAAGS SSPHLPCLQD KRSGASRDQG KQCASFGGVN TIVQVGSGVS HTSESIWQQI  480
LTKYGDITAK STVTSPEFVA FVKQSILKIV ELMHNNTARG LSDENISTIG RILGDLERVE  540
VKVDWLRTRF VAVGHLIDYA KAKDNRDMIL RRFNEKRAQV AQLQLHLTQL QGKLDEAEAS  600
LQELQHQKSI VSSYLEPNNH QPLIFFSAFF SNSSPLCILS TMVIHI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ394984	0.0	FQ394984.1 Vitis vinifera clone SS0AFA18YG11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010665261.1	0.0	PREDICTED: uncharacterized protein LOC100855073 isoform X1
TrEMBL	F6GYT7	0.0	F6GYT7_VITVI; Uncharacterized protein
STRING	VIT_18s0117g00140.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-16	FAR1 family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01012789001