PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013085001
Common NameLOC100250498, VIT_02s0012g01940
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 336aa    MW: 37672.7 Da    PI: 8.7101
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013085001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.2e-32159212255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GSVIVT01013085001 159 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 212
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.58E-15156212IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28157212IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-23159212IPR006447Myb domain, plants
PfamPF002492.1E-7160211IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PSCFELSLSN PRATSESNNS NHFHLLQNGN TNLLHSFQQS  60
QYPHHHHHQH QLHHQLFQQQ QGFSQELGFL RPIRGIPVYQ NPPSFPFAQQ PLDSSIASST  120
TTNTAATTTG SSPFQSHHQG LIRSRFLSRF PAKRSMRAPR MRWTTTLHAR FVHAVELLGG  180
HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKTTDRAA ASSGQSDVYE NGSSGDTSED  240
VMFDIQNPRK SELSIQQGRP NVHQEKDYHG LWSNSSREAW LHGKQRDSGG NTPTLEEDMD  300
PKCLSYERIS DVSSSNLSGT SPKKPNLEFT LGRSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16160214458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16160214458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16160214458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16160214458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16160214458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16160214458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16160214458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16160214458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.118290.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3827900.0FQ382790.1 Vitis vinifera clone SS0ABG43YJ15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663135.10.0PREDICTED: probable transcription factor KAN2 isoform X2
SwissprotQ9C6161e-88KAN2_ARATH; Probable transcription factor KAN2
TrEMBLF6HT560.0F6HT56_VITVI; Uncharacterized protein
STRINGVIT_02s0012g01940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.13e-81G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]