PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013228001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 278aa    MW: 30251.4 Da    PI: 4.4475
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013228001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.3e-08193238346
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                         W+  Ed  l++a k ++++   +W++Ia+ ++ gR+   c  r+  
  GSVIVT01013228001 193 GWSSGEDIALLNALKAFPKDvpmRWEKIAAAVP-GRSKAACMKRFSE 238
                        6********************************.********99965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.238.101.1E-91093IPR011992EF-hand domain pair
SuperFamilySSF474732.82E-112795IPR011992EF-hand domain pair
PfamPF138335.3E-144193IPR002048EF-hand domain
PROSITE profilePS502228.8236297IPR002048EF-hand domain
PROSITE patternPS0001807587IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS512939.541189244IPR017884SANT domain
Gene3DG3DSA:1.10.10.602.3E-7190240IPR009057Homeodomain-like
SMARTSM007176.2E-7190242IPR001005SANT/Myb domain
SuperFamilySSF466892.65E-11191241IPR009057Homeodomain-like
PfamPF002494.9E-7193238IPR001005SANT/Myb domain
CDDcd001679.51E-7194240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEVEGEVLQF EDYFPSMMEG LGAEGFMEEL CQGFHLLMDV EKGLITFESL RRSTWQLGLQ  60
EMGDDELVWM LSEGDLDGDG ALNQTEFCIL MLRLSPADQD LCSNQARTIL QHPRIFIPNP  120
LTNHSSSSPS PSPPSSSPSP SSSSNLNPSN LSSSGSPSLS SSAPSPPPIS PPAISGSARV  180
EDGMAMENDE KEGWSSGEDI ALLNALKAFP KDVPMRWEKI AAAVPGRSKA ACMKRFSELK  240
KGFRNSKAAA EDHKLVLQPL IVLIYRMNIN VCFLLFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3h4s_E3e-27912821133KCBP interacting Ca2+-binding protein
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4581161e-155AM458116.2 Vitis vinifera contig VV79X000512.3, whole genome shotgun sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.17e-27MYB_related family protein