PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013319001
Common NameVIT_12s0121g00120
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GATA
Protein Properties Length: 260aa    MW: 29219.9 Da    PI: 7.6423
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013319001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.31.8e-12431835
               GATA  8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       +TplWR+gp  ++ LCnaCG ++r +g+
  GSVIVT01013319001  4 ETPLWRNGPPEKPVLCNACGSRWRIRGT 31
                       8********88888**********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002027.37E-11231No hitNo description
SMARTSM004010.0013248IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-7334No hitNo description
Gene3DG3DSA:3.30.50.104.5E-9332IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.9E-10431IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MVAETPLWRN GPPEKPVLCN ACGSRWRIRG TLEDYIPKHA LAVMTSHARD RTQNPHQHKL  60
PLERTFVSHP NIMVHNESHS DTKENAIRYD DPYSSGLGDN ASHRSSSGSS SISCSDHSHT  120
ELLSSIPCSN NWNSNVPSRK RSLVQYRNLT FVEKLQKDLY DILQNEEPTT LSECPDGNLI  180
YYENSGNPEI GLGVLLLKPP IVSAQQESKT FKSEGKMTSS SWQVSSLFFL FVYLFFMSSH  240
LVSPIVRNDT KQSFKIIPV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4566460.0AM456646.2 Vitis vinifera contig VV78X231457.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019078933.11e-130PREDICTED: GATA transcription factor 27
TrEMBLD7UD680.0D7UD68_VITVI; Uncharacterized protein
STRINGVIT_12s0121g00120.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27491530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.16e-28GATA transcription factor 26