PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013445001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 180aa    MW: 19567.9 Da    PI: 8.7655
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013445001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.3e-102448226
                       -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                       ++++C+f+++ G C++GdrC++ H 
  GSVIVT01013445001 24 DRVNCPFYFKIGACRHGDRCSRLHN 48
                       6899********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0652250IPR000571Zinc finger, CCCH-type
SMARTSM003560.00682349IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-72448IPR000571Zinc finger, CCCH-type
PRINTSPR018484.5E-212847IPR009145U2 auxiliary factor small subunit
PRINTSPR018484.5E-214767IPR009145U2 auxiliary factor small subunit
PRINTSPR018484.5E-2179101IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSSRLIQGAS MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN  60
MYQQLGKFGE IESLNVCDNL ADHMIGAVLL RPPYHCGFFS LHVTGGILIG EGAGTGVRSA  120
ERGLSCGIEK ERKGSEVIFL VLCLGLALAF FFSYWACLGS PEIGLLNMKL VRKRSKLSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A5e-2811941113Splicing factor U2AF 23 kDa subunit
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.155981e-62flower| fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4847115e-93AM484711.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X228491.7, clone ENTAV 115.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP157633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44785.16e-31C3H family protein