PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013671001
Common NameLOC100249427, VIT_18s0001g01820
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 573aa    MW: 63327.9 Da    PI: 4.4857
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013671001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.12.9e-52211472128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        ppGfrFhPtdeelv +yLkkk+ +++l+l ++i+evd+yk++P+dLp  +k+k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd++
  GSVIVT01013671001  21 PPGFRFHPTDEELVLYYLKKKICRRRLKL-DIIAEVDVYKWDPEDLPglSKLKTGDRQWFFFSPRDRKYPNGARSNRATRHGYWKATGKDRT 111
                        8****************************.99***************6559999************************************** PP

                NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + + + + vg+kktLvfykgrap+ e+tdWvmhey++
  GSVIVT01013671001 112 ISC-NIRSVGVKKTLVFYKGRAPSKERTDWVMHEYTM 147
                        ***.9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-5918170IPR003441NAC domain
PROSITE profilePS5100555.01220170IPR003441NAC domain
PfamPF023651.3E-2721146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MKVTVGDSSP CFDGDEKSAW PPGFRFHPTD EELVLYYLKK KICRRRLKLD IIAEVDVYKW  60
DPEDLPGLSK LKTGDRQWFF FSPRDRKYPN GARSNRATRH GYWKATGKDR TISCNIRSVG  120
VKKTLVFYKG RAPSKERTDW VMHEYTMDEE ELKRCPNVQD YYALYKVFKK SGPGPKNGEQ  180
YGAPFKEEEW ADEDDLDVSN YSVEETPPEQ LNGVISVNNS KPNGQDCQAD AWDDIWKGLA  240
EAPPVVPLRV DDYVNLLAQV IGEEEAQTPL VDSSLNGAFV ADPISTVLTP TSQQYAVPEN  300
VEFTQSASSQ LQLHEAPEVT SAPNISEQER GLSEEDFLEM DDLLGPEPIP QNYEKTEENL  360
QFEGDGLSIL DLYHDAAMFL RDIGPIDQGT VPHPYLNTIE NEMVNQLNYQ LQPHSVGADQ  420
ISGQLWTLDQ SVCTSAESIQ GIIGQPTSGV VYASSSTNVP TEGNQNMNGE GGNGAGNRFT  480
SALWSFVESI PTTPASASEN ALVNRALVRM SSFSRMRMNA LNTNAGNGGA ATWKGGINKG  540
GFIILSVIGA LIAIFWVLML GPVKMLGRCL PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-48131478140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.221790.0bud| flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4444270.0AM444427.2 Vitis vinifera contig VV78X065537.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265611.10.0PREDICTED: NAC domain-containing protein 17
SwissprotQ9XIC51e-156NAC17_ARATH; NAC domain-containing protein 17
TrEMBLD7TFR50.0D7TFR5_VITVI; Uncharacterized protein
STRINGVIT_18s0001g01820.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9932711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-139NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]