PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013901001
Common NameVIT_16s0013g00870
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 287aa    MW: 33202.4 Da    PI: 8.3434
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013901001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.5e-08139159626
                        -SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                        C++f+ + +C++G+ C FaHg
  GSVIVT01013901001 139 CPDFRNGAECPRGEACEFAHG 159
                        99999988************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.521133161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5133164IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-4133160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-6138162IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-6139159IPR000571Zinc finger, CCCH-type
SMARTSM0035619169192IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009010anatomyseed
PO:0025501developmental stagefruit formation stage
PO:0025502developmental stagefruit ripening stage
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MVSFNSRRVV FLKLPFINTH TLCTPGANSF HYHCPKIFQT SALMNISKMW KHLNLSASFY  60
DFSDYQLEEL GLNPTPFQYL PDRTQHPIYS SDEFRMYGFK IKKCSKTRSH DWTECPFAHR  120
GEKAKRRDPR KVNYAAISCP DFRNGAECPR GEACEFAHGV FEYWLHPAKY RTRACNAGTF  180
CQRKVCFFAH TPEQLRAETK YKCHFTYRVR RSNGGEDKRS GSDADERSVF VDSEAAAKSE  240
SPVDGYAEFL RALRALKIPH DDDKSFGYDT VSDPDWKFDW ISDLVE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.19140.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in embryo (at protein level). {ECO:0000269|PubMed:9501112}.
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4518500.0AM451850.2 Vitis vinifera contig VV78X122048.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279559.20.0PREDICTED: zinc finger CCCH domain-containing protein 54
SwissprotO650363e-69C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLD7U7730.0D7U773_VITVI; Uncharacterized protein
STRINGVIT_16s0013g00870.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP886844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-71C3H family protein